Tools-ISMA

ISMA

isma: an R package for the integrative analysis of mutations detected by multiple pipelines.
Noemi Di Nanni (1, 2), Matteo Gnocchi (1), Marco Moscatelli (1), Luciano Milanesi (1) and Ettore Mosca (1, *)

(1) Institute of Biomedical Technologies, CNR, Segrate (MI), Italy;
(2) PhD Program in Bioengineering and Bioinformatics, Department of Industrial and Information Engineering, University of Pavia, Pavia, Italy.

(*) Corresponding author: ettore.mosca --- itb.cnr.it;

Acknowledgements: The work was supported by: the Italian Ministry of Education, University and Research (MIUR) [INTEROMICS PB05, PRIN 2015 20157ATSLF]; and the Lombardy Region Fondazione Regionale per la Ricerca Biomedica (FRRB) [LYRA 2015-0010].

Package Version: 0.1.3

Date: 2018-12-20


Dowload:

Installation Instructions:

  • refer to the instruction reported in isma.html vignette

 

  • Docker Environment for package: LINK

         Installation Instructions:

  1. download docker image file [LINK]
  2. open terminal 
  3. run: docker load --input isma.tar
  4. run: docker run -d -p <port>: 8787 isma
  5. open internet browser
  6. log to rstudio web page via:  <IP> : <port> 
  7. user: rstudio password: rstudio

 

THIS SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.